Recent Publications

These are recent publications since starting at HIMB. Go to People pages for more complete lists and Google Scholar links.

Preprints

• Álvarez-Noriega M, Madin JS, Baird AH, Dornelas M, Connolly SR (preprint) Disturbance-induced changes in size-structure promote coral biodiversity. bioRxiv [link]

• Brambilla V, Baird AH, Barbosa M, Dehnert I, Madin JS, Peddie C, Dornelas M (preprint) Coral niche construction: coral recruitment increases along a coral-built structural complexity gradient. bioRxiv [link]

• Chow CFY, Bolton C, Boutros N, Brambilla V, Fontoura L, Hoey AS, Madin JS, Pizarro O, Torres-Pulliza D, Woods RM, Zawada KJA, Barbosa M, Dornelas M (preprint) Coral settlement and recruitment responses to reef fish foraging and trait diversity. bioRxiv [link]

• Keller A, Ankenbrand M, Bruelheide H, Dekeyzer S, Enquist BJ, Erfanian MB, Falster D, Gallagher RV, Hammock J, Kattge J, Leonhardt SD, Madin JS, Maitner B, Neyret M, Onstein RE, Pearse WD, Poelen JH, Salguero-Gomez R, Schneider FD, Tóth AB, Penone C (preprint) Ten (mostly) simple rules to future-proof trait data in ecological and evolutionary sciences. [link]

• Madin JS, McWilliam M, Quigley K, Bay L, Bellwood D, Doropoulos C, Fernandes L, Harrison P, Hoey A, Mumby P, Richards Z, Riginos C, Suggett D, van Oppen M (preprint) Selecting species for restoration in foundational assemblages. bioRxiv [link]

2022

• Brambilla V, Barbosa M, Dehnert I, Madin JS, Maggioni D, Peddie C, Dornelas M (2022) Shaping coral traits: plasticity more than filtering. Marine Ecology Progress Series, 692:53-65. [link]

• Caruso C, Rocha de Souza M, Ruiz-Jones L, Conetta D, Hancock J, Hobbs C, Hobbs C, Kahkejian V, Kitchenn R, Marin C, Monismith S, Madin JS, Gates R, Drury C (accepted) Genetic patterns in Montipora capitata across an environmental mosaic in Kāne’ohe Bay. Molecular Ecology. [link]

• Herberstein M, McLean D, Lowe E, Wolff J, Khan MDK, Smith K, Allen A, Bulbert M, Buzatto B, Eldridge M, Falster D, Fernandez Winzer L, Griffith S, Madin JS, Narendra A, Westoby M, Whiting M, Wright I, Carthey A (2022) AnimalTraits - a curated animal trait database for body mass, metabolic rate and brain size. Scientific Data, 9:265. [link]

• McWilliam M, Dornelas M, Álvarez-Noriega M, Baird AH, Connolly SR, Madin JS (accepted) Net effects of life-history traits explain persistent differences in abundance among similar species. Ecology,

• van Woesik R, Shlesinger T, Grottoli AG, Toonen RJ, Vega Thurber R, Warner ME, Hulver AM, Chapron L, McLachlan RL, Albright R, Crandall E, DeCarlo TM, Donovan MK, Eirin-Lopez J, Harrison HB, Heron SF, Huang D, Humanes A, Krueger T, Madin JS, Manzello D, McManus LC, Matz M, Muller EM, Rodriguez-Lanetty M, Vega-Rodriguez M, Voolstra CR, Zaneveld J (2022) Coral-bleaching responses to climate change across biological scales. Global Change Biology, [link]

2021

• Abrego D, Howells EJ, Smith SDA, Madin JS, Sommer B, Schmidt-Roach S, Cumbo VR, Thomson DP, Rosser NL, Baird AH (2021) Factors limiting the range extension of corals into high-Latitude reef regions. Diversity, 13: 632. https://doi.org/10.3390/d13120632

• Baird AH, Guest J, Edwards A, Bauman A, Bouwmeester J, Mera H, Abrego D, Alvarez-Noriega M, Babcock R, Barbosa M, Bonito V, Burt J, Cabaitan P, Chang C-F, Chavanich S, Chen C, Chen C-J, Chen W-J, Chung F-C, Connolly S, Cumbo V, Dornelas M, Doropoulos C, Eyal G, Eyal-Shaham L, Fadli N, Figueiredo J, Flot J-F, Gan S-H, Gomez E, Graham E, Grinblat M, Gutiérrez-Isaza N, Harii S, Harrison P, Hatta M, Ho NAJ, Hoarau G, Hoogenboom M, Howells E, Iguchi A, Isomura N, Jamodiong E, Jandang S, Keyse J, Kitanobo S, Kongjandtre N, Kuo C-Y, Ligson C, Lin C-H, Low J, Loya Y, Maboloc E, Madin JS, Mezaki T, Min C, Morita M, Moya A, Neo S-H, Nitschke M, Nojima S, Nozawa Y, Piromvaragorn S, Plathong S, Puill-Stephan E, Quigley K, Ramírez-Portilla C, Ricardo G, Sakai K, Sampayo E, Shlesinger T, Sikim L, Simpson C, Sims C, Sinniger F, Spiji D, Tabalanza T, Tan CH, Terraneo TI, Torda G, True J, Tun K, Vicentuan K, Viyakarn V, Waheed Z, Ward S, Willis B, Woods R, Woolsey E, Yamamoto H, Yusuf S (2021) An Indo-Pacific coral spawning database. Scientific Data, 8:35. https://doi.org/10.1038/s41597-020-00793-8

• *Gómez-Gras D, Linares C, Dornelas M, Madin JS, Brambilla V, Ledoux J-B, López-Sendino P, Bensoussan N, Garrabou J (2021) Climate change transforms the functional identity of Mediterranean coralligenous assemblages. Ecology Letters, 24:1038-1051. https://doi.org/10.1111/ele.13718

• *Miller S, Yadav S, Madin JS (2021) The contribution of corals to reef structural complexity. Coral Reefs, 40:1679-1685. https://doi.org/10.1007/s00338-021-02190-y

• *Mizerek TL, Madin JS, Benzoni F, Huang D, Luiz OJ, Mera H, Schmidt-Roach S, Smith SDA, Sommer B, Baird AH (2021) No evidence for tropicalization of coral assemblages in a subtropical climate change hot spot. Coral Reefs, 40:1451–1461. https://doi.org/10.1007/s00338-021-02167-x

• Nielsen DA, Fierer N, Geoghegan JL, Gillings MR, Gumerov V, Madin JS, Moore L, Paulsen IT, Reddy TBK, Tetu SG, Westoby M (2021) Aerobic bacteria and archaea tend to have larger and more versatile genomes. Oikos, 130:501-511. https://doi.org/10.1111/oik.07912

• Roach TNF, Yadav S, Caruso C, Dilworth J, Foley CM, Hancock JR, Huckeba J, Huffmyer AS, Hughes K, Kahkejian VA, Madin EMP, Matsuda SB, McWilliam M, Miller S, Santoro EP, Rocha de Souza M, Torres-Pulliza D, Drury C, Madin JS (2021) A field primer for monitoring benthic ecosystems using structure-from-motion photogrammetry. Journal of Visualized Experiments, 170:e61815. https://dx.doi.org/10.3791/61815

• *Yadav S, Madin JS, Dacks R, Fisam M, Mawyer A (2021) Shifting fish consumption preferences can impact coral reef resilience in the Maldives: a case study. Marine Policy, 134:104773. https://doi.org/10.1016/j.marpol.2021.104773

• Westoby M, Gillings MR, Madin JS, Nielsen DA, Paulsen IT, Tetu SG (2021) Trait-dimensions in bacteria and archaea compared to vascular plants. Ecology Letters, 24:1487-1504. https://doi.org/10.1111/ele.13742

• Westoby M, Nielsen DA, Gillings MR, Gumerov V, Madin JS, Paulsen IT, Tetu SG (2021) Strategic traits of bacteria and archaea vary widely within substrate use groups. FEMS Microbiology Ecology, 97:fiab142. https://doi.org/10.1093/femsec/fiab142

• Westoby M, Nielsen DA, Gillings MR, Litchman E, Madin JS, Paulsen IT, Tetu SG (2021) Cell size, genome size and maximum growth rate are near-independent dimensions of ecological variation across bacteria and archaea. Ecology & Evolution, 11:3956-3976. https://doi.org/10.1002/ece3.7290

2020

• Bridge TCL, Luiz OJ, Kuo C-Y, Precoda K, Madin EMP, Madin JS, Baird AH (2020) Incongruence between life-history traits and conservation status in reef corals. Coral Reefs. [link]

• Dornelas MA, JS Madin (2020) Novel communities are a risky business. Science, 370:164-165. [link]

• Fontoura L, Zawada KJA, D’agata S, Álvarez-Noriega M, Baird AH, Boutros N, Dornelas M, Luiz OJ, Madin JS, Maina JM, Pizarro O, Torres-Pulliza D, Woods RM and Madin EMP (2019) Climate-driven shift in coral morphological structure predicts decline of juvenile reef fishes. Global Change Biology. [link]

• Gallagher RV, Falster DS, Maitner BS, Salguero-Gomez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, Andrew SC, Balk M, Bland LM, Boyle BL, Bravo-Avila CH, Brennan I, Carthey AJR, Catullo R, Cavazos BR, Chown S, Fadrique B, Gibb H, Halbritter AH, Hammock J, Hogan JA, Holewa H, Hope M, Iversen CM, Jochum M, Kearney M, Keller A, Mabee P Manning P, McCormack L, Michaletz ST, Park DS, Perez TM, Pineda-Munoz S, Ray CA, Rossetto M, Sauquet H, Sparrow B, Spasojevic MJ, Telford RJ, Tobias JA, Violle C, Walls R, Weiss KCB, Westoby M, Wright IJ, Enquist BJ (2020) The Open Traits Network: Using Open Science principles to accelerate trait-based science across the Tree of Life. Nature Ecology & Evolution. [link]

• Madin EMP, Madin JS, Harmer AMT, Barrett NS, Booth DJ, Caley MJ, Cheal AJ, Edgar GJ, Emslie MJ, Gaines SD, Sweatman HPA (2020) Latitude and protection affect decadal trends in reef trophic structure over a continental scale. Ecology & Evolution 10:6954-6966. [link]

• Madin JS, Baird AH, Baskett ML, Connolly SR, Dornelas MA (2020) Partitioning colony size variation into growth and partial mortality. Biology Letters. [link]

• Madin JS, Nielsen DA, Brbic M, Corkrey R, Danko D, Edwards K, Engqvist MKM, Fierer N, Geoghegan JL, Gillings M, Kyrpides NC, Litchman E, Mason CE, Moore L, Nielsen SL, Paulsen IT, Price ND, Reddy TBK, Richards MA, Rocha EPC, Schmidt TM, Shaaban H, Shukla M, Supek F, Tetu SG, Vieira-Silva S, Wattam AR, Westfall DA, Westoby M (2020) A synthesis of bacterial and archaeal phenotypic trait data. Scientific Data, 7:170. [link]

• Precoda K, Hardt MJ, Baird AH, Madin JS (2020) Tissue biomass trades off with growth but not reproduction in corals. Coral Reefs. [link]

• Scavo Lord K, Lesneski KC, Bengtsson ZA, Kuhn KM, Madin JS, Cheung B, Ewa R, Taylor JF, Burmester EM, Morey J, Kaufman L, Finnerty JR (2020) Multi-year viability of a reef coral population living on mangrove roots suggests an important role for mangroves in the broader habitat mosaic of corals. Frontiers in Marine Science, 7:377. [link]

• Torres-Pulliza D, Dornelas M, Pizarro O, Bewley M, Blowes SA, Boutros N, Brambilla V, Chase TJ, Frank G, Friedman A, Hoogenboom MO, Williams S, Zawada KJA, Madin JS (2020) A geometric basis for surface habitat complexity and biodiversity. Nature Ecology & Evolution 4:1495-1501. [link]

2019

• Dornelas M, Madin EMP, Bunce M, DiBattista JD, Johnson M, Madin JS, Magurran AE, McGill BJ, Pettorelli N, Pizarro O, Williams SB, Winter M, Bates AE (2019) Towards a macroscope: Leveraging technology to transform the breadth, scale and resolution of macroecological data. Global Ecology and Biogeography 28:1937–1948. [link]

• Hughes TP, Kerry JT, Baird AH, Connolly SR, Chase TJ, Dietzel A, Hill T, Hoey AS, Hoogenboom MO, Jacobson M, Kerswell A, Madin JS, Mieog A, Paley AS, Pratchett MS, Torda G, Woods RM (2019) Global warming impairs stock–recruitment dynamics of corals. Nature, 568:387–390. [link]

• Madin EMP, Harborne AR, Harmer AMT, Luiz OJ, Atwood TB, Sullivan BJ, Madin JS (2019) Marine reserves shape seascapes on scales visible from space. Proc R Soc B, 286:20190053. [link]

• Roberts TE, Bridge TCL, Caley MJ, Madin JS, Baird AH (2019) Resolving the depth zonation paradox in reef‐building corals. Ecology, 100:e02761. [link]

• Zawada KJA, Dornelas M, Madin JS (2019) Quantifying coral morphology. Coral Reefs, 38:1281–1292. [link] [bioRxiv]

• Zawada KJA, Madin JS, Baird AH, Bridge TCL, Dornelas M (2019) Morphological traits can track coral reef responses to the Anthropocene. Functional Ecology, 33:962-975. [link]

2018

• Madin JS, Baird AH, Bridge T, Connolly SR, Zawada K, Dornelas M (2018) Cumulative effects of cyclones and bleaching on coral cover and species richness at Lizard Island. Marine Ecology Progress Series, 604:263-268.

• Baird AH, Álvarez-Noriega M, Cumbo VR, Dornelas M, Connolly SR, Madin JS (2018) Effects of tropical storms on the demography of reef corals. Marine Ecology Progress Series, 606:29-38.

• Dornelas M et al., including Madin JS (2018) BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27:760-786.

• McWilliam M, Hoogenboom MO, Baird AH, Kuo C-Y, Madin JS, Hughes TP (2018) Biogeographical disparity in the functional diversity and redundancy of corals. Proceedings of the National Academy of Science USA, 201716643. [link]

• Baird AH, Madin JS, Alvarez Noriega M, Fontoura L, Precoda K, Torres-Pulliza D, Woods R, Zawada K, Hughes TP (2018) A decline in bleaching suggests that depth can provide a refuge from global warming in most coral taxa. Marine Ecology Progress Series, 603:257-264.

• Álvarez-Noriega M, Baird AH, Bridge T, Dornelas M, Fontoura L, Precoda K, Torres-Pulliza D, Woods R, Zawada K, Madin JS (2018) Contrasting patterns of changes in abundance following a bleaching event between juvenile and adult scleractinian corals. Coral Reefs, 37:527-532.

• Álvarez-Noriega M, Baird AH, Dornelas M, Madin JS, Connolly SR (2018) Negligible effect of competition on coral colony growth. Ecology, 99:1347-1356. [link]

• House JE, Brambilla V, Bidaut LM, Christie AP, Pizarro O, Madin JS, Dornelas M (2018) Moving to 3D: relationships between coral planar area, surface area and volume. PeerJ, 6:e4280 [link]

• Precoda K, Baird AH, Madsen A, Mizerek T, Sommer B, Su SN, Madin JS (2018) How does a widespread reef coral maintain a population in an isolated environment? Marine Ecology Progress Series, 594:85-94.

• Mizerek TL, Baird AH, Madin JS (2018) Species traits as indicators of coral bleaching. Coral Reefs, 37:791–800.